Alexey I Nesvizhskii, PhD
Godfrey Dorr Stobbe Professor of Bioinformatics
Professor of Pathology
Professor of Computational Medicine and Bioinformatics
[email protected]

Available to mentor
Alexey I Nesvizhskii, PhD
Professor
  • Center Memberships
  • Recent Publications
    • Center Memberships
    • Center Member
      Rogel Cancer Center
    Recent Publications See All Publications
    • Journal Article
      Immunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides.
      Ferreira HJ, Stevenson BJ, Pak H, Yu F, Almeida Oliveira J, Huber F, Taillandier-Coindard M, Michaux J, Ricart-Altimiras E, Kraemer AI, Kandalaft LE, Speiser DE, Nesvizhskii AI, Müller M, Bassani-Sternberg M. Nat Commun, 2024 Mar 15; 15 (1): 2357 DOI:10.1038/s41467-024-46408-3
      PMID: 38490980
    • Journal Article
      Proceedings of the EuBIC-MS developers meeting 2023.
      Beltrao P, Van Den Bossche T, Gabriels R, Holstein T, Kockmann T, Nameni A, Panse C, Schlapbach R, Lautenbacher L, Mattanovich M, Nesvizhskii A, Van Puyvelde B, Scheid J, Schwämmle V, Strauss M, Susmelj AK, The M, Webel H, Wilhelm M, Winkelhardt D, Wolski WE, Xi M. J Proteomics, 2024 Jul 2; 105246 DOI:10.1016/j.jprot.2024.105246
      PMID: 38964537
    • Journal Article
      CCN6 suppresses metaplastic breast carcinoma by antagonizing WNT/β-catenin signaling to inhibit EZH2-driven EMT.
      Gonzalez ME, Brophy B, Eido A, Leonetti AE, Djomehri SI, Augimeri G, Carruthers NJ, Cavalcante RG, Giordano F, Andò S, Nesvizhskii AI, Fearon ER, Kleer CG. Cancer Res, 2024 Jul 18; DOI:10.1158/0008-5472.CAN-23-4054
      PMID: 39024552
    • Journal Article
      Are Internal Fragments Observable in Electron Based Top-Down Mass Spectrometry?
      Mikawy NN, Rojas Ramírez C, DeFiglia SA, Szot CW, Le J, Lantz C, Wei B, Zenaidee MA, Blakney GT, Nesvizhskii AI, Loo JA, Ruotolo BT, Shabanowitz J, Anderson LC, Håkansson K. Mol Cell Proteomics, 2024 Jul 17; 100814 DOI:10.1016/j.mcpro.2024.100814
      PMID: 39029587
    • Preprint
      Silyl Ether Enables High Coverage Chemoproteomic Interaction Site Mapping
      Takechi S, Ngo C, Burton N, Villanueva M, Boatner L, Yu F, Kim P, Biletch E, Turmon A, Nesvizhskii A, Backus K. ChemRxiv, DOI:10.26434/chemrxiv-2024-21r7b
    • Preprint
      Koina: Democratizing machine learning for proteomics research.
      Lautenbacher L, Yang KL, Kockmann T, Panse C, Chambers M, Kahl E, Yu F, Gabriel W, Bold D, Schmidt T, Li K, MacLean B, Nesvizhskii AI, Wilhelm M. 2024 Jun 3; DOI:10.1101/2024.06.01.596953
      PMID: 38895358
    • Preprint
      LONP1 regulation of mitochondrial protein folding provides insight into beta cell failure in type 2 diabetes.
      Li J, Zhu J, Deng Y, Reck EC, Walker EM, Sidarala V, Hubers DL, Pasmooij MB, Shin C-S, Bandesh K, Motakis E, Nargund S, Kursawe R, Basrur V, Nesvizhskii AI, Stitzel ML, Chan DC, Soleimanpour SA. 2024 Jun 3; DOI:10.1101/2024.06.03.597215
      PMID: 38895283
    • Preprint
      diaTracer enables spectrum-centric analysis of diaPASEF proteomics data.
      Li K, Teo GC, Yang KL, Yu F, Nesvizhskii AI. 2024 May 30; DOI:10.1101/2024.05.25.595875
      PMID: 38854051
    Featured News & Stories
    Department News
    K. Yang is first first-author in 'Nat. Comm!'
    Congratulations to Kevin Yang (PhD student in the Nesvizhskii lab) on his first first-author publication in "Nature Communications!" 
         Brian Athey, Alexey Nesvizhskii, Charles Parkos
    Department News
    Dr. Alexey Nesvizhskii named inaugural Godfrey Dorr Stobbe Professor of Bioinformatics
    Dr. Alexey Nesvizhskii named inaugural Godfrey Dorr Stobbe Professor of Bioinformatics