Available to mentor
The RNA and Single Molecule Analysis Group of Nils Walter - Vision:
The Walter lab provides a welcoming, diverse, inclusive, and equitable environment where we leverage cross-disciplinary tools from chemical biology, analytical chemistry, biophysics, biochemistry, molecular biology, cell biology, and bioinformatics to define and unleash the powers of RNA biology and DNA nanotechnology. RNA is a magical molecule that both likely started life and sustains it today. Over 75% of our genome encodes non-protein coding RNA molecules, compared with only <2% that encodes proteins. How this RNA machinery broadly guides cellular function – through the maintenance, processing and regulated expression of all genetic information – is still poorly understood. For an inspiring read on the prospects of RNA research, please check out this Paper. By comparison, DNA is better understood as the genetic blueprint of life, but recently its utility has dramatically expanded as a scaffold for nanodevices and nanorobots, heralding a modern materials science.
We integrate powerful, cutting-edge, single molecule experimental and computational approaches to study the structure, dynamics and function of RNAs and DNA nanodevices outside and inside human cells. Our experimental approaches span from single molecule fluorescence resonance energy transfer (smFRET) and super-resolution fluorescence microscopy (“nanoscopy”) to transcriptomics, molecular biology, biochemistry, and big data analytics, providing students and postdocs with a uniquely qualifying knowledge base and skill set that they have leveraged into a wide range of careers in academia, industry and national labs. We even founded our very own successful biotech startup company pursuing single molecule analytical chemistry and molecular diagnostics of biomarkers of disease – entrepreneurial spirit is welcome!
Finally, we are making single-molecule and RNA techniques more widely available to those who are not experts in these fields through the University of Michigan’s Single Molecule Analysis in Real Time (SMART) Center and the cross-disciplinary Center for RNA Biomedicine, both of which Nils founded and now directs.
Please also check out some of our press releases in the sidebar and the News section, as well as our twitter account.
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Postdoctoral FellowUniversity of Vermont, Microbiology and Molecular Genetics, 1999
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Dr.-Ing.TU Darmstadt, Darmstadt, 1995
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Center MemberRogel Cancer Center
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Center MemberCenter for Computational Medicine and Bioinformatics
We integrate powerful, cutting-edge, single molecule experimental and computational approaches to study the structure, dynamics and function of RNAs and DNA nanodevices outside and inside human cells. Our experimental approaches span from single molecule fluorescence resonance energy transfer (smFRET) and super-resolution fluorescence microscopy (“nanoscopy”) to transcriptomics, molecular biology, biochemistry, and big data analytics, providing students and postdocs with a uniquely qualifying knowledge base and skill set that they have leveraged into a wide range of careers in academia, industry and national labs. We even founded our very own successful biotech startup company pursuing single molecule analytical chemistry and molecular diagnostics of biomarkers of disease – entrepreneurial spirit is welcome!
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Chauvier A, Dandpat SS, Romero R, Walter NG. Nat Commun, 2024 May 10; 15 (1): 3955Journal ArticleA nascent riboswitch helix orchestrates robust transcriptional regulation through signal integration.
DOI:10.1038/s41467-024-48409-8 PMID: 38729929 -
Dai L, Johnson-Buck A, Laird PW, Tewari M, Walter NG. Anal Chem, 2024 Oct 29; 96 (43): 17209 - 17216.Journal ArticleUltrasensitive Amplification-Free Quantification of a Methyl CpG-Rich Cancer Biomarker by Single-Molecule Kinetic Fingerprinting.
DOI:10.1021/acs.analchem.4c03002 PMID: 39425638 -
Walter N. 2024 Oct 17; Springer Science and Business Media LLC,PreprintFoundation model for efficient biological discovery in single-molecule data
DOI:10.21203/rs.3.rs-4970585/v1 -
Chauvier A, Walter NG. Curr Opin Struct Biol, 2024 Oct; 88: 102893Journal ArticleBeyond ligand binding: Single molecule observation reveals how riboswitches integrate multiple signals to balance bacterial gene regulation.
DOI:10.1016/j.sbi.2024.102893 PMID: 39067113 -
Dai L, Johnson-Buck A, Walter NG. 2024 Sep 24;PreprintMechanistic model for epigenetic maintenance by methyl-CpG-binding domain proteins.
DOI:10.1101/2024.09.22.614380 PMID: 39386650 -
Sgouralis I, Xu LWQ, Jalihal AP, Kilic Z, Walter NG, Pressé S. Nat Methods, 2024 Sep; 21 (9): 1716 - 1724.Journal ArticleBNP-Track: a framework for superresolved tracking.
DOI:10.1038/s41592-024-02349-9 PMID: 39039336 -
Li J, Zhang L, Johnson-Buck A, Walter NG. 2024 Aug 27;PreprintFoundation model for efficient biological discovery in single-molecule data.
DOI:10.1101/2024.08.26.609721 PMID: 39253410 -
Reddy MR, Walter NG, Sevryugina YV. Journal of Chemical Education, 2024 Jul 9; 101 (7): 2740 - 2748.Journal ArticleImplementation and Evaluation of a ChatGPT-Assisted Special Topics Writing Assignment in Biochemistry
DOI:10.1021/acs.jchemed.4c00226