Matthias Wilms, PHD

Matthias Wilms
Assistant Professor of Radiology
Medical School
[email protected]
Available to mentor
Matthias Wilms, PHD
Matthias Wilms
Assistant Professor
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  • About

    My research centers around the development of machine learning solutions for various medical image analysis applications. From a technical perspective, I am particularly interested in developing and advancing new generative machine learning methods that accurately model the complex dynamics and variations of normal or pathological processes in the human body. My methods usually rely on mathematically sound and verifiable concepts from fields such as computational anatomy and related areas. The developed models can then serve as computer-aided diagnosis support tools or as tools for systematic data exploration in research scenarios. While the sensitivity and specificity of the models is of paramount importance in a healthcare context, my work also explicitly focuses on the explainability/interpretability and fairness of their decisions to enhance acceptability and trust by clinicians and patients. Finally, I am also interested in developing methods that achieve good results even if trained with limited data, a common problem in medical settings.

    Over the years, I have been involved in numerous applied, interdisciplinary research projects where the machine learning methods developed by me or by my mentees have been successfully applied. This includes work on respiratory motion modeling for radiation therapy, various neuroimaging-related tasks involving cross-sectional or longitudinal imaging data and ocular and non-ocular disease detection and imaging biomarker discovery from retinal imaging data.

    Center Memberships

    • Center Member
      e-Health and Artificial Intelligence Initiative

    Recent Publications

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    • Journal Article
      RetCond: A Conditional Diffusion Model for Self-Explanatory Multi-Class Fundus Image Classification
      O. Ahsan A, Nielsen C, Souza R, Aulakh A, D. Forkert N, Wilms M. Journal of Medical Systems, 2026 Dec 1; 50 (1): DOI:10.1007/s10916-026-02414-0
      PMID: 42171897
    • Journal Article
      Age-stratified multimodal MRI and machine learning to explore autism-related brain characteristics in youth
      Martinez GC, Winder A, Amador K, Uruñuela E, Wilms M, MacEachern SJ, Forkert ND. Frontiers in Psychiatry, 2026 Jul 3; 17: 1841698 DOI:10.3389/fpsyt.2026.1841698
    • Preprint
      A Neuroimaging Simulation Framework for Developing and Evaluating Causal AI
      Libert-Scott E, Stanley EAM, Vigneshwaran V, Wilms M, Ohara EY, Forkert ND. 2026 Jul 1; arXiv, DOI:10.48550/arxiv.2606.28684
    • Proceeding / Abstract / Poster
      Beyond Dichotomization: Ordinal Prediction of Functional Stroke Outcomes from 4D CTP and Clinical Metadata Using Deep Learning
      Amador K, Winder AJ, Fiehler J, Barber PA, Wilms M, Forkert ND. 2026 May 22; 00: 1 - 5. DOI:10.1109/isbi61048.2026.11515976
    • Proceeding / Abstract / Poster
      A synthetic data‑based evaluation framework for global and voxelwise biological brain age prediction methods
      Bullock RAS, Stanley EAM, Carlson HL, Forkert ND, Wilms M. Progress in Biomedical Optics and Imaging, 2026 Feb 15; 13926: 69 DOI:10.1117/12.3085047
    • Journal Article
      Integrated system for characterization of malignant and benign adrenal lesions and differentiation of high‑ and low‑risk adrenal cancer on CT scans using radiomics‑based decision support
      Yordanova A, Hadjiiski L, Day R, Fiori S, Caoili EM, Cohan RH, Chan H-P, Worden F, Hammer G, Wilms M, Zhou C. 2026 Apr 30; 93 - 93. DOI:10.1117/12.3087435
    • Proceeding / Abstract / Poster
      Performance disparity analysis of a generative classifier for multiclass fundus image classification
      Ahsan AO, Stanley EAM, Souza R, Nielsen C, Forkert ND, Wilms M. Progress in Biomedical Optics and Imaging, 2026 Apr 4; 13930: 19 DOI:10.1117/12.3086176
    • Proceeding / Abstract / Poster
      Towards resolution-independent retinal image classification using implicit neural representations
      Badhwar R, Aulakh A, Ahsan AO, Forkert ND, Wilms M. 2026 Apr 4; 20 DOI:10.1117/12.3086162