Patrick Schloss, PhD

headshot of Pat Schloss
Frederick G Novy Legacy Professor of Microbiome Research
Professor of Microbiology and Immunology
Program Director of Microbiology and Immunology AP&A
Medical School
[email protected]
Available to mentor
Patrick Schloss, PhD
headshot of Pat Schloss
Professor
  • Qualifications
  • Center Memberships
  • Research Overview
  • Links
  • Recent Publications
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  • Qualifications

    • PhD
      Cornell University, Ithaca, NY, United States
      1997 - 2002
    • BS
      Cornell University, Ithaca, NY, United States
      1995 - 1997

    Center Memberships

    • Center Member
      Rogel Cancer Center
    • Center Member
      Center for Computational Medicine and Bioinformatics

    Research Overview

    "...it would appear to be a pointless and doubtful exercise to examine and disentangle the apparently random appearing bacteria in normal feces and the intestinal tract, a situation that seems controlled by a thousand coincidences... Yet I have nevertheless devoted myself now for a year virtually exclusively to this special study, it was with the conviction that the accurate knowledge of these conditions is essential, for the understanding of not only the physiology of digestion..., but also the pathology and therapy of microbial intestinal diseases."
    --Theodor Escherich (1888)

    Nearly 130 years later, our research group shares the dedication of Theodor Escherich as we try to understand the role of the gut microbiota in Clostridium difficile infections and the progression of colorectal cancer. Since Escherich found the causative agent for diarrhea, what we now call E. coli, a lot has happened in science. We now have a far better understanding of microbiology, molecular biology, ecology, evolutionary theory, and statistics. Our research group is dedicated to integrating across disciplines to advance our knowledge of the role of the microbiome in human health. Human microbiome research is experiencing an amazing period of growth and we are helping to lead that effort.

    Links

    • Schloss Lab

    Recent Publications

    See All Publications
    • Preprint
      Rarefaction is better than robust Aitchison PCA and other compositional data analysis methods at controlling for uneven sequencing effort
      Schloss PD. 2026 Jan 10; bioRxiv, DOI:10.64898/2026.01.06.697977
    • Journal Article
      A call for healing and unity
      Schloss PD. Clinical Microbiology Reviews, 2025 Jun 1; 38 (2): DOI:10.1128/cmr.00043-25
      PMID: 40013863
    • Journal Article
      A call for the United States to continue investing in science
      Blader I, Goodrum F, Imperiale MJ, Casadevall A, Arias CA, Baumler A, Burnham CAD, Cuomo CA, Detweiler CS, Forrest GN, Gilbert JA, Lovett S, Maloy S, McAdam A, Newton I, Reguera G, O'Toole GA, Schloss PD, Shade A, Whiteley M. Clinical Microbiology Reviews, 2025 Jun 1; 38 (2): DOI:10.1128/cmr.00044-25
      PMID: 40013868
    • Journal Article
      A call for healing and unity
      Schloss PD. Microbiology Spectrum, 2025 May 1; 13 (5): DOI:10.1128/spectrum.00541-25
    • Journal Article
      A call for healing and unity.
      Schloss PD. ASM Case Rep, 2025 May; 1 (3): DOI:10.1128/asmcr.00042-25
      PMID: PMC12530217
    • Journal Article
      A call for the United States to continue investing in science
      Blader I, Goodrum F, Imperiale MJ, Casadevall A, Arias CA, Baumler A, Burnham CAD, Cuomo CA, Detweiler CS, Forrest GN, Gilbert JA, Lovett S, Maloy S, McAdam A, Newton I, Reguera G, O'Toole GA, Schloss PD, Shade A, Whiteley M. Microbiology Spectrum, 2025 May 1; 13 (5): DOI:10.1128/spectrum.00568-25
    • Journal Article
      A call for the United States to continue investing in science.
      Blader I, Goodrum F, Imperiale MJ, Casadevall A, Arias CA, Baumler A, Burnham C-AD, Cuomo CA, Detweiler CS, Forrest GN, Gilbert JA, Lovett S, Maloy S, McAdam A, Newton I, Reguera G, O'Toole GA, Schloss PD, Shade A, Whiteley M. ASM Case Rep, 2025 May; 1 (3): DOI:10.1128/asmcr.00043-25
      PMID: PMC12530245
    • Journal Article
      A call for healing and unity
      Schloss PD. Mbio, 2025 Apr 1; 16 (4): DOI:10.1128/mbio.00624-25
      PMID: 40013910

    Featured News & Stories

    A fluorescence micrograph of mouse colon
    Department News

    What we do in M&I: A gutsy dive into the microbiome

    Have you ever wondered about the hidden microbial world inside your gut? Dive into the fascinating study of the molecules that fuel our energy or learn how a high fiber diet can do wonders for your gut. From the life-saving early detection of colon cancer to finding possible treatments for inflammatory bowel diseases and C diff. infection, M&I cutting-edge research is transforming our understanding of the biology that impacts our health and is shaping the future of healthcare.
    Department News

    Pat Schloss and Will Fitzsimmons receive 2023 EBS Awards

    Pat Schloss and Will Fitzsimmons receive 2023 EBS Awards