Minji Kim, PhD

 Minji Kim
Assistant Professor of Computational Medicine and Bioinformatics
Medical School
[email protected]
Available to mentor
Minji Kim, PhD
Minji Kim
Assistant Professor
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    Recent Publications

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    • Journal Article
      Fun2Fountain: Investigating transcription-replication conflicts in 3D genome
      Kim M. Molecular Cell, 2026 May 21; 86 (10): 1831 - 1833. DOI:10.1016/j.molcel.2026.04.028
    • Preprint
      Cohesin extrudes chromatin loop unidirectionally through two modes of mechanisms in human cells
      Wang P, Meng L, Jiang L, Li Y, Huang J, Yu T, Chai H, Kim M, Wang X, Ruan Y. 2026 May 7; bioRxiv, DOI:10.64898/2026.05.01.722300
    • Preprint
      3D chromatin compartment of round spermatids encodes the spatiotemporal program of histone-to-protamine exchange in spermiogenesis
      Rabbani M, Apell Z, Parnell TJ, Moritz L, Kim S, Srinivasan S, Agrawal R, Vargo A, Orchard P, Xie W, Freddolino L, Boyle AP, Li JZ, Lesch BJ, Cairns B, Kim M, Wilson TE, Hammoud SS. 2026 Mar 14; bioRxiv, DOI:10.64898/2026.03.10.710708
    • Journal Article
      Multiscale Hybrid Surface Topographies Orchestrate Immune Regulation, Antibacterial Defense, and Tissue Regeneration
      Tokmedash M, Robins J, VanEpps J, Kim M, Min J. Advanced healthcare materials, 2025 Nov 26;
    • Preprint
      HiChIA-Rep quantifies the similarity between enrichment-based chromatin interactions datasets.
      Kim S, Jackson JT, Zhang HB, Kim M. 2026 Feb 3; DOI:10.64898/2026.02.01.703086
      PMID: 41676742
    • Journal Article
      Hi-C for genome-wide detection of enhancer-hijacking rearrangements in routine lymphoid cancer biopsies
      Wu J, Chu SCA, Cho J, Movahed-Ezazi M, Galbraith K, Fang CS, Yang Y, Schroff C, Sikkink K, Perez-Arreola M, Van Meter L, Gemus S, Belton JM, Song X, Gurumurthy A, Xiao H, Nardi V, Louissant A, Pillai RK, Song JY, Shasha D, Tsirigos A, Perry A, Brown N, Gindin T, Shao L, Cieslik MP, Kim M, Schmitt AD, Snuderl M, Ryan RJH. Cell Genomics, 2026 Jan 1; DOI:10.1016/j.xgen.2026.101166
    • Journal Article
      Interplay between cohesin and RNA polymerase II in regulating chromatin interactions and gene transcription
      Kim M, Wang P, Clow PA, Chien E, Wang X, Peng J, Chai H, Liu X, Lee B, Ngan CY, Milenkovic O, Chuang JH, Wei CL, Casellas R, Cheng AW, Ruan Y. Nature Structural and Molecular Biology, 2026 Jan 1; DOI:10.1038/s41594-025-01708-0
      PMID: 41530636
    • Journal Article
      Chrom-Sig: de-noising 1D genomic profiles by signal processing methods
      Gupta NJ, Apell Z, Kim M. Bioinformatics, 2025 Dec 1; 41 (12): DOI:10.1093/bioinformatics/btaf645
      PMID: 41325270

    Featured News & Stories

         Announcing DCMB/CCMB Fall 2025 seminar series
    Department News

    Announcing DCMB/CCMB Fall 2025 seminar series

    DCMB/CCMB seminar series features outstanding scientists in the field of computational medicine and bioinformatices, machine learning and AI. From prestigious universities from across the country and U-M, they will present their latest research.
    Department News

    DCMB welcomes new faculty

    DCMB welcomes eight new faculty in 2022-2023.
    Department News

    Welcome to Dr. Minji Kim, DCMB new Assistant Professor

    Welcome to Dr. Minji Kim, DCMB new Assistant Professor