Minji Kim, PhD
Assistant Professor of Computational Medicine and Bioinformatics
Medical School
Email:
[email protected]
Available to mentor
Minji Kim, PhD
Assistant Professor
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Minji Lab
Recent Publications
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Hammoud S, Rabbani M, Apell Z, Parnell T, Moritz L, Kim S, Srinivasan S, Agrawal R, Vargo A, Orchard P, Xie W, Freddolino L, Boyle A, Li J, Lesch BJ, Cairns B, Kim M, Wilson T. Res Sq, 2026 Jul 24;Journal ArticleHigher-order genome architecture of spermatids guides chromatin assembly in mature sperm.
DOI:10.21203/rs.3.rs-10308188/v1 PMID: PMC13419593 -
Kim M. Molecular Cell, 2026 May 21; 86 (10): 1831 - 1833.Journal ArticleFun2Fountain: Investigating transcription-replication conflicts in 3D genome
DOI:10.1016/j.molcel.2026.04.028 PMID: 42167147 -
Wu J, Chu SCA, Cho J, Movahed-Ezazi M, Galbraith K, Fang CS, Yang Y, Schroff C, Sikkink K, Perez-Arreola M, Van Meter L, Gemus S, Belton JM, Song X, Gurumurthy A, Xiao H, Nardi V, Louissant A, Pillai RK, Song JY, Shasha D, Tsirigos A, Perry A, Brown N, Gindin T, Shao L, Cieslik MP, Kim M, Schmitt AD, Snuderl M, Ryan RJH. Cell Genomics, 2026 May 13; 6 (5):Journal ArticleHi-C for genome-wide detection of enhancer-hijacking rearrangements in routine lymphoid cancer biopsies
DOI:10.1016/j.xgen.2026.101166 -
Wang P, Meng L, Jiang L, Li Y, Huang J, Yu T, Chai H, Kim M, Wang X, Ruan Y. 2026 May 5;PreprintCohesin extrudes chromatin loop unidirectionally through two modes of mechanisms in human cells.
DOI:10.64898/2026.05.01.722300 PMID: 42146630 -
Rabbani M, Apell Z, Parnell TJ, Moritz L, Kim S, Srinivasan S, Agrawal R, Vargo A, Orchard P, Xie W, Freddolino L, Boyle AP, Li JZ, Lesch BJ, Cairns B, Kim M, Wilson TE, Hammoud SS. 2026 Mar 12;Preprint3D chromatin compartment of round spermatids encodes the spatiotemporal program of histone-to-protamine exchange in spermiogenesis.
DOI:10.64898/2026.03.10.710708 PMID: 41959395 -
Tokmedash M, Robins J, VanEpps J, Kim M, Min J. Advanced healthcare materials, 2025 Nov 26;Journal ArticleMultiscale Hybrid Surface Topographies Orchestrate Immune Regulation, Antibacterial Defense, and Tissue Regeneration
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Kim S, Jackson JT, Zhang HB, Kim M. 2026 Feb 3;PreprintHiChIA-Rep quantifies the similarity between enrichment-based chromatin interactions datasets.
DOI:10.64898/2026.02.01.703086 PMID: 41676742 -
Kim M, Wang P, Clow PA, Chien E, Wang X, Peng J, Chai H, Liu X, Lee B, Ngan CY, Milenkovic O, Chuang JH, Wei CL, Casellas R, Cheng AW, Ruan Y. Nature Structural and Molecular Biology, 2026 Feb 1; 33 (2): 259 - 274.Journal ArticleInterplay between cohesin and RNA polymerase II in regulating chromatin interactions and gene transcription
DOI:10.1038/s41594-025-01708-0 PMID: 41530636
Featured News & Stories
Department News
Announcing DCMB/CCMB Fall 2025 seminar series
DCMB/CCMB seminar series features outstanding scientists in the field of computational medicine and bioinformatices, machine learning and AI. From prestigious universities from across the country and U-M, they will present their latest research.
Department News
DCMB welcomes new faculty
DCMB welcomes eight new faculty in 2022-2023.
Department News
Welcome to Dr. Minji Kim, DCMB new Assistant Professor
Welcome to Dr. Minji Kim, DCMB new Assistant Professor