Godfrey Dorr Stobbe Professor of Bioinformatics
Professor of Pathology
Professor of Computational Medicine and Bioinformatics
[email protected]
Available to mentor
Alexey I Nesvizhskii, PhD
Professor
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Center MemberRogel Cancer Center
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Ferreira HJ, Stevenson BJ, Pak H, Yu F, Almeida Oliveira J, Huber F, Taillandier-Coindard M, Michaux J, Ricart-Altimiras E, Kraemer AI, Kandalaft LE, Speiser DE, Nesvizhskii AI, Müller M, Bassani-Sternberg M. Nat Commun, 2024 Mar 15; 15 (1): 2357Journal ArticleImmunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides.
DOI:10.1038/s41467-024-46408-3 PMID: 38490980 -
Avelar RA, Gupta R, Carvette G, da Veiga Leprevost F, Colina J, Teitel J, Nesvizhskii AI, O'Connor CM, Hatzoglou M, Shenolikar S, Arvan P, Narla G, DiFeo A. 2024 Mar 28;PreprintIntegrated stress response plasticity governs normal cell adaptation to chronic stress via the PP2A-TFE3-ATF4 pathway.
DOI:10.21203/rs.3.rs-4013396/v1 PMID: 38585734 -
Tignor N, Koptyra MP, Chowdhury S, Ma W, Rokita JL, Gritsenko M, Song X, Marino GB, Deng EZ, Petralia F, Krek A, Rykunov D, Leprevost FDV, Hosseini N, Rathi KS, Hu Y, Migliozzi S, Yaron T, Fu W, Zhang B, Zhu Y, Brown MA, Whiteaker JR, Mesri M, Robles AI, Rodland K, Cantley LC, Iavarone A, Aldape K, Cieślik M, Nesvizhskii AI, Ippolito JE, Rubin JB, Paulovich AG, Zhang H, Ma'ayan A, Liu T, Storm PB, Resnick AC, Rood BR, Wang P. Cancer Research, 2024 Mar 22; 84 (6_Supplement): 3955 - 3955.Journal ArticleAbstract 3955: A proteogenomic study of high-grade glioma among adolescents and young adults
DOI:10.1158/1538-7445.am2024-3955 -
Cho H, Li GX, Mannan R, Hosseini N, Hsiao Y, Zhang Y, Dagar A, Kumar-Sinha C, Cieslik MP, Dhanasekaran SM, Nesvizhskii AI, Chinnaiyan AM, Consortium CPTA. Cancer Research, 2024 Mar 22; 84 (6_Supplement): 5217 - 5217.Journal ArticleAbstract 5217: Genome instability in renal tumors
DOI:10.1158/1538-7445.am2024-5217 -
Chu A, Hsiao Y, Deng Y, Wang C, Kyle J, Dou Y, Pino JC, Posso C, Henry L, Chen L, Li GX, Lih T-SM, Geffen Y, Yu F, Ding L, Omenn G, Kumar C, Dhanasekaran SM, Traer E, Tyner JW, Zhang H, Liu T, Gosline S, Zhang B, Chinnaiyan A, Nesvizhskii AI, Cieslik M. Cancer Research, 2024 Mar 22; 84 (6_Supplement): 7354 - 7354.Journal ArticleAbstract 7354: Proteogenomic and metabolomic characterization of acute myeloid leukemia
DOI:10.1158/1538-7445.am2024-7354 -
Kim K-H, Migliozzi S, Koo H, Hong J-H, Park SM, Kim S, Kwon HJ, Ha S, Garofano L, Oh YT, D'Angelo F, Kim CI, Kim S, Lee JY, Kim J, Hong J, Jang E-H, Mathon B, Di Stefano A-L, Bielle F, Laurenge A, Nesvizhskii AI, Hur E-M, Yin J, Shi B, Kim Y, Moon K-S, Kwon JT, Lee SH, Lee SH, Gwak HS, Lasorella A, Yoo H, Sanson M, Sa JK, Park C-K, Nam D-H, Iavarone A, Park JB. Cancer Cell, 2024 Mar 11; 42 (3): 358 - 377.e8.Journal ArticleIntegrated proteogenomic characterization of glioblastoma evolution.
DOI:10.1016/j.ccell.2023.12.015 PMID: 38215747 -
Hsiao Y, Zhang H, Li GX, Deng Y, Yu F, Kahrood HV, Steele JR, Schittenhelm RB, Nesvizhskii AI. 2024 Mar 10;PreprintAnalysis and visualization of quantitative proteomics data using FragPipe-Analyst.
DOI:10.1101/2024.03.05.583643 PMID: 38496650 -
Alec Chu S-C, Hsiao Y, Deng Y, Wang C, Kyle J, Dou Y, Pino J, Posso C, Henry L, Li G, Ding L, Chen L, Lih M, Geffen Y, Omenn G, Kumar C, Dhanasekaran S, Yu F, Traer E, Tyner JW, Zhang H, Liu T, Gosline S, Zhang B, Chinnaiyan A, Nesvizhskii AI, Cieslik M. Blood Cancer Discovery, 2024 Mar 4; 5 (2_Supplement): p27 - p27.Journal ArticleAbstract P27: Proteogenomic and metabolomic analysis of acute myeloid leukemia reveals molecular and functional underpinnings of cellular and clinical phenotypes
DOI:10.1158/2643-3249.bcdsymp24-p27
Department News
Congratulations to Kevin Yang (PhD student in the Nesvizhskii lab) on his first first-author publication in "Nature Communications!"
Department News
Dr. Alexey Nesvizhskii named inaugural Godfrey Dorr Stobbe Professor of Bioinformatics