Alexey I Nesvizhskii, PhD
Godfrey Dorr Stobbe Professor of Bioinformatics
Professor of Pathology
Professor of Computational Medicine and Bioinformatics
[email protected]

Available to mentor

Alexey I Nesvizhskii, PhD
Professor
  • Center Memberships
  • Recent Publications
  • Center Memberships
    • Center Member
      Rogel Cancer Center
    Recent Publications See All Publications
    • Journal Article
      Immunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides.
      Ferreira HJ, Stevenson BJ, Pak H, Yu F, Almeida Oliveira J, Huber F, Taillandier-Coindard M, Michaux J, Ricart-Altimiras E, Kraemer AI, Kandalaft LE, Speiser DE, Nesvizhskii AI, Müller M, Bassani-Sternberg M. Nat Commun, 2024 Mar 15; 15 (1): 2357 DOI:10.1038/s41467-024-46408-3
      PMID: 38490980
    • Preprint
      Integrated stress response plasticity governs normal cell adaptation to chronic stress via the PP2A-TFE3-ATF4 pathway.
      Avelar RA, Gupta R, Carvette G, da Veiga Leprevost F, Colina J, Teitel J, Nesvizhskii AI, O'Connor CM, Hatzoglou M, Shenolikar S, Arvan P, Narla G, DiFeo A. 2024 Mar 28; DOI:10.21203/rs.3.rs-4013396/v1
      PMID: 38585734
    • Journal Article
      Abstract 3955: A proteogenomic study of high-grade glioma among adolescents and young adults
      Tignor N, Koptyra MP, Chowdhury S, Ma W, Rokita JL, Gritsenko M, Song X, Marino GB, Deng EZ, Petralia F, Krek A, Rykunov D, Leprevost FDV, Hosseini N, Rathi KS, Hu Y, Migliozzi S, Yaron T, Fu W, Zhang B, Zhu Y, Brown MA, Whiteaker JR, Mesri M, Robles AI, Rodland K, Cantley LC, Iavarone A, Aldape K, Cieślik M, Nesvizhskii AI, Ippolito JE, Rubin JB, Paulovich AG, Zhang H, Ma'ayan A, Liu T, Storm PB, Resnick AC, Rood BR, Wang P. Cancer Research, 2024 Mar 22; 84 (6_Supplement): 3955 - 3955. DOI:10.1158/1538-7445.am2024-3955
    • Journal Article
      Abstract 5217: Genome instability in renal tumors
      Cho H, Li GX, Mannan R, Hosseini N, Hsiao Y, Zhang Y, Dagar A, Kumar-Sinha C, Cieslik MP, Dhanasekaran SM, Nesvizhskii AI, Chinnaiyan AM, Consortium CPTA. Cancer Research, 2024 Mar 22; 84 (6_Supplement): 5217 - 5217. DOI:10.1158/1538-7445.am2024-5217
    • Journal Article
      Abstract 7354: Proteogenomic and metabolomic characterization of acute myeloid leukemia
      Chu A, Hsiao Y, Deng Y, Wang C, Kyle J, Dou Y, Pino JC, Posso C, Henry L, Chen L, Li GX, Lih T-SM, Geffen Y, Yu F, Ding L, Omenn G, Kumar C, Dhanasekaran SM, Traer E, Tyner JW, Zhang H, Liu T, Gosline S, Zhang B, Chinnaiyan A, Nesvizhskii AI, Cieslik M. Cancer Research, 2024 Mar 22; 84 (6_Supplement): 7354 - 7354. DOI:10.1158/1538-7445.am2024-7354
    • Journal Article
      Integrated proteogenomic characterization of glioblastoma evolution.
      Kim K-H, Migliozzi S, Koo H, Hong J-H, Park SM, Kim S, Kwon HJ, Ha S, Garofano L, Oh YT, D'Angelo F, Kim CI, Kim S, Lee JY, Kim J, Hong J, Jang E-H, Mathon B, Di Stefano A-L, Bielle F, Laurenge A, Nesvizhskii AI, Hur E-M, Yin J, Shi B, Kim Y, Moon K-S, Kwon JT, Lee SH, Lee SH, Gwak HS, Lasorella A, Yoo H, Sanson M, Sa JK, Park C-K, Nam D-H, Iavarone A, Park JB. Cancer Cell, 2024 Mar 11; 42 (3): 358 - 377.e8. DOI:10.1016/j.ccell.2023.12.015
      PMID: 38215747
    • Preprint
      Analysis and visualization of quantitative proteomics data using FragPipe-Analyst.
      Hsiao Y, Zhang H, Li GX, Deng Y, Yu F, Kahrood HV, Steele JR, Schittenhelm RB, Nesvizhskii AI. 2024 Mar 10; DOI:10.1101/2024.03.05.583643
      PMID: 38496650
    • Journal Article
      Abstract P27: Proteogenomic and metabolomic analysis of acute myeloid leukemia reveals molecular and functional underpinnings of cellular and clinical phenotypes
      Alec Chu S-C, Hsiao Y, Deng Y, Wang C, Kyle J, Dou Y, Pino J, Posso C, Henry L, Li G, Ding L, Chen L, Lih M, Geffen Y, Omenn G, Kumar C, Dhanasekaran S, Yu F, Traer E, Tyner JW, Zhang H, Liu T, Gosline S, Zhang B, Chinnaiyan A, Nesvizhskii AI, Cieslik M. Blood Cancer Discovery, 2024 Mar 4; 5 (2_Supplement): p27 - p27. DOI:10.1158/2643-3249.bcdsymp24-p27
    Featured News & Stories
    Department News
    K. Yang is first first-author in 'Nat. Comm!'
    Congratulations to Kevin Yang (PhD student in the Nesvizhskii lab) on his first first-author publication in "Nature Communications!" 
    Brian Athey, Alexey Nesvizhskii, Charles Parkos
    Department News
    Dr. Alexey Nesvizhskii named inaugural Godfrey Dorr Stobbe Professor of Bioinformatics
    Dr. Alexey Nesvizhskii named inaugural Godfrey Dorr Stobbe Professor of Bioinformatics