1105 N University Room 5022
Ann Arbor, MI 48109
Available to mentor
James C. Bardwell, Ph.D.
Rowena G. Matthews Collegiate Professor, MCDB HHMI Investigator
[email protected]
https://sites.lsa.umich.edu/bardwell-lab/
Howard Hughes Medical Investigator
Department of Molecular Cellular Developmental Biology
Program in Cellular Molecular Biology
University of Michigan Biophysics
Department of Biological Chemistry
Jim received his PhD from the University of Wisconsin in Molecular Biology. He then continued his studies in mRNA Stability at NCI, Bacterial Genetics at Harvard Medical School and Protein Folding at University of Regensburg in Germany. He has been affiliated with University of Michigan since 1996 and was appointed HHMI investigator in 2005. In Jim’s spare time he enjoys biking, kayaking, and giving tours to Natural History Museum visitors of the coral reef and octopus tanks in his office.
Bardwell Lab
Proteins start life as linear amino acid sequences and end up as beautifully folded, active structures. Dr. Bardwell’s laboratory focuses on recently discovered machinery that drives protein folding in the cell. Powerful genetic, structural, and biophysical tools are being used to generate a detailed picture of how these folding machines work. Members of the Bardwell lab also use directed evolution to improve protein folding. They do this by asking organisms themselves to solve difficult protein-folding problems. By examining the solutions to these problems, they are better able to understand folding in the cell. Our studies include using techniques such as bacterial genetics, biochemistry, biophysics including NMR, X-ray crystallography, and cell biology, microscopy, RNA-seq, RNAi, and CRISPR knockouts
As a new project, Dr. Bardwell's lab plans to investigate the regeneration pathways found in jellyfish. Jellyfish possess superb regeneration powers to repair bodily damage. As their fragility has limited their use as a model organism, the labs work will include transferring the CRISPR/Cas9-mediated gene knockout and transgenesis capabilities, that Dr. Brady at MIT developed for Clytia, into the Cassiopee jellyfish. We will focus on regeneration pathways mediated by proteins that have human homologues like Wnt. Applying what we learn about regeneration pathways from these undisputed world-master regenerators may give us some clues about how to turn these pathways back on in humans.
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Sahoo BR, Subramanian V, Bardwell JCA. Research Square,PreprintBackbone 1H, 13C, and 15N chemical shift assignments for human SERF2
DOI:10.21203/rs.3.rs-3820038/v1 -
Dulchavsky M, Mitra R, Wu K, Li J, Boer K, Liu X, Zhang Z, Vasquez C, Clark CT, Funckes K, Shankar K, Bonnet-Zahedi S, Siddiq M, Sepulveda Y, Suhandynata RT, Momper JD, Calabrese AN, George O, Stull F, Bardwell JCA. Nat Chem Biol, 2023 Nov; 19 (11): 1406 - 1414.Journal ArticleDirected evolution unlocks oxygen reactivity for a nicotine-degrading flavoenzyme.
DOI:10.1038/s41589-023-01426-y PMID: 37770699 -
Wu K, Horowitz S, Bardwell JCA. 2023 Nov 1; Biophysics of Molecular Chaperones, 199 - 216.ChapterVisualization of Chaperone Mediated Protein Folding Using X-ray Crystallography
DOI:10.1039/bk9781839165986-00199 -
Sahoo BR, Deng X, Wong EL, Clark N, Yang H, Subramanian V, Guzman BB, Harris SE, Dehury B, Miyashita E, Saito H, Dominguez D, Bardwell JCA. bioRxiv,PreprintSERF2, an RNA G-quadruplex Binding Protein, promotes stress granule formation
DOI:10.1101/2023.10.09.561572 -
Sahoo BR, Kocman V, Clark N, Myers N, Deng X, Wong EL, Yang HJ, Kotar A, Guzman BB, Dominguez D, Plavec J, Bardwell JCA. 2023 Sep 21;PreprintEffects of protein G-quadruplex interactions on phase transitions and protein aggregation.
DOI:10.1101/2023.09.21.558871 PMID: 37790366 -
Sahoo BR, Bardwell JCA. FEBS J, 2023 Sep; 290 (17): 4150 - 4162.Journal ArticleSERF, a family of tiny highly conserved, highly charged proteins with enigmatic functions.
DOI:10.1111/febs.16555 PMID: 35694898 -
Marcelino T, Docampo MAR, Qian X, Ade C, Brodszkij E, Ceccato M, Foss M, Dulchavsky M, Bardwell JCA, Städler B. Macromol Biosci, 2023 Aug; 23 (8): e2200528Journal ArticleSurfaces Coated with Polymer Brushes Work as Carriers for Histidine Ammonia Lyase.
DOI:10.1002/mabi.202200528 PMID: 36971346 -
Mitra R, Bardwell JC. Biophysical Journal, 2023 Feb; 122 (3): 9aJournal ArticleThe “structural” journey of a ribonucleoprotein complex: From molecules to droplets
DOI:10.1016/j.bpj.2022.11.278