Lana Garmire, PhD
Associate Professor of Computational Medicine and Bioinformatics
Associate Professor of Biostatistics
[email protected]

Available to mentor

Lana Garmire, PhD
Associate Professor
  • About
  • Links
  • Qualifications
  • Center Memberships
  • Research Overview
  • Recent Publications
  • About

    I'm a nationally and internationally recognized expert in translational and biomedical informatics. I obtained the MA degree in Statistics (2005) and PhD degree in Comparative Biochemistry (Computational Biology focus, 2007), both from UC-Berkeley. I started the first tenure-track faculty position in University of Hawaii Cancer Center later 2012 and was promoted to Associate Professor with tenure in 2017. I moved to University of Michigan in 2018 to expand the research to multi-modal research (genomics, EMR and pathological imaging analysis). I published over 100 papers in top quality journals including Cell, Nature Communications, Genome Biology, Genome Medicine, Clinical Cancer Research. I contributed as the senior corresponding author in the majority of these publications. I delivered over 90 invited talks to institutes including National Library of Medicine (NLM) and National Academy of Sciences (NAS). I have mentored over 90 Assistant Professors, MD fellows, postdocs, graduate students and undergraduates of various academic backgrounds, in Biology, Mathematics, Physics, (bio)Statistics, Bioengineering, Computer Science and Electrical Engineering. Most PhD and postdoc trainees became faculty or senior scientists in private sectors. I served on various NIH study sections and currently am a standing member of BDMA study section. I am on the editorial advisory board for journals Genome Biology and Journal of Proteome Research. Among the awards, the noticeable ones include US Presidential Early Career Scientists and Engineers in 2019, and fellowship of American Institute of Medical and Biological Engineering (AIMBE) since 2022.

    Links
    • Garmire Group
    Qualifications
    • Postdoctoral Fellow
      University of California, San Diego, Bioengineering, 2011
    • PhD
      University of California, Berkeley, Berkeley, 2007
    • MA
      University of California, Berkeley, Berkeley, 2005
    • BS
      Ocean University of China, Qingdao, 2001
    Center Memberships
    • Center Member
      Rogel Cancer Center
    • Center Member
      Institute for Healthcare Policy and Innovation
    • Center Member
      Precision Health Initiative
    • Center Member
      e-Health and Artificial Intelligence Initiative
    Research Overview

    My research interest lies in applying data science for actionable transformation of human health from the bench to bedside. Current research focus areas include cutting edge single-cell sequencing informatics and genomics; precision medicine through integration of multi-omics data types; novel modeling and computational methods for biomarker research; public health genomics. I apply my biomedical informatics and analytical expertise to study diseases such as cancers, and neonatal/women's health.

    Recent Publications See All Publications
    • Preprint
      Discover overlooked complications after preeclampsia from three real-world medical record datasets of over 100,000 pregnancies.
      Zhu H, Yang X, Tao L, Xie W, Chang J-H, Wang ZP, Langen E, Li R, Gamire LX. 2024 Nov 2; DOI:10.1101/2023.12.05.23299296
      PMID: 38405849
    • Journal Article
      Adding Highly Variable Genes to Spatially Variable Genes Can Improve Cell Type Clustering Performance in Spatial Transcriptomics Data.
      Li Y, Stanojevic S, He B, Jing Z, Huang Q, Kang J, Garmire LX. Res Sq, 2024 Oct 25; DOI:10.21203/rs.3.rs-5315913/v1
      PMID: 39502778
    • Preprint
      BSNMani: Bayesian Scalar-on-network Regression with Manifold Learning
      Li Y, Choi KS, Dunlop BW, Craighead WE, Mayberg HS, Garmire L, Guo Y, Kang J. 2024 Oct 3; arXiv, DOI:10.48550/arxiv.2410.02965
    • Preprint
      Beyond the Spectrum: Subtype-Specific Molecular Insights into Autism Spectrum Disorder Via Multimodal Data Integration.
      Zahiri J, Mirzaie M, Duan K, Xiao Y, Aamodt C, Yang X, Nazari S, Andreason C, Lopez L, Barnes CC, Arias S, Nalabolu S, Garmire L, Wang T, Hoekzema K, Eichler EE, Pierce K, Lewis NE, Courchesne E. 2024 Sep 23; DOI:10.1101/2024.09.17.24313857
      PMID: 39399028
    • Preprint
      Multi-omics Analysis of Umbilical Cord Hematopoietic Stem Cells from a Multi-ethnic Cohort of Hawaii Reveals the Transgenerational Effect of Maternal Pre-Pregnancy Obesity.
      Du Y, Benny PA, Shao Y, Schlueter RJ, Gurary A, Lum-Jones A, Lassiter CB, AlAkwaa FM, Tiirikainen M, Towner D, Ward WS, Garmire LX. 2024 Aug 13; DOI:10.1101/2024.07.27.24310936
      PMID: 39108521
    • Preprint
      Landscape of Differentiation Potentials as a "Hallmark" in Oral-derived MSCs.
      Chopra H, Cao C, Alice H, Kak S, Maska B, Tagett R, Sugai J, Garmire L, Kaigler D. 2024 Aug 3; DOI:10.1101/2024.08.02.606413
      PMID: 39211139
    • Presentation
      Utilize the Cellular Heterogeneity at the Single Cell Level for Cancer Treatment and Survival Prediction
      Garmire L. 2024 Jul 10;
    • Presentation
      single-cell and spatial transcriptomics-based cancer drug and progression prediction
      Garmire L. 2024 Jun 14;
    Featured News & Stories World map using maize stars to indicate France, China and Korea
    Department News
    Meet DCMB's international visiting students, Summer 2024
    This summer and into the fall, DCMB is hosting three international students for up to six months each. They come from China, France and Korea, eager to learn and expand their education and experience through an extended visit at the University of Michigan (U-M) and DCMB.