Lana Garmire, PhD
Associate Professor of Computational Medicine and Bioinformatics
Associate Professor of Biostatistics
[email protected]

Available to mentor

Lana Garmire, PhD
Associate Professor
  • About
  • Links
  • Qualifications
  • Center Memberships
  • Research Overview
  • Recent Publications
  • About

    I'm a nationally and internationally recognized expert in translational and biomedical informatics. I obtained the MA degree in Statistics (2005) and PhD degree in Comparative Biochemistry (Computational Biology focus, 2007), both from UC-Berkeley. I started the first tenure-track faculty position in University of Hawaii Cancer Center later 2012 and was promoted to Associate Professor with tenure in 2017. I moved to University of Michigan in 2018 to expand the research to multi-modal research (genomics, EMR and pathological imaging analysis). I published over 100 papers in top quality journals including Cell, Nature Communications, Genome Biology, Genome Medicine, Clinical Cancer Research. I contributed as the senior corresponding author in the majority of these publications. I delivered over 90 invited talks to institutes including National Library of Medicine (NLM) and National Academy of Sciences (NAS). I have mentored over 90 Assistant Professors, MD fellows, postdocs, graduate students and undergraduates of various academic backgrounds, in Biology, Mathematics, Physics, (bio)Statistics, Bioengineering, Computer Science and Electrical Engineering. Most PhD and postdoc trainees became faculty or senior scientists in private sectors. I served on various NIH study sections and currently am a standing member of BDMA study section. I am on the editorial advisory board for journals Genome Biology and Journal of Proteome Research. Among the awards, the noticeable ones include US Presidential Early Career Scientists and Engineers in 2019, and fellowship of American Institute of Medical and Biological Engineering (AIMBE) since 2022.

    Links
    • Garmire Group
    Qualifications
    • Postdoctoral Fellow
      University of California, San Diego, Bioengineering, 2011
    • PhD
      University of California, Berkeley, Berkeley, 2007
    • MA
      University of California, Berkeley, Berkeley, 2005
    • BS
      Ocean University of China, Qingdao, 2001
    Center Memberships
    • Center Member
      Rogel Cancer Center
    • Center Member
      Precision Health Initiative
    • Center Member
      e-Health and Artificial Intelligence Initiative
    Research Overview

    My research interest lies in applying data science for actionable transformation of human health from the bench to bedside. Current research focus areas include cutting edge single-cell sequencing informatics and genomics; precision medicine through integration of multi-omics data types; novel modeling and computational methods for biomarker research; public health genomics. I apply my biomedical informatics and analytical expertise to study diseases such as cancers, and neonatal/women's health.

    Recent Publications See All Publications
    • Presentation
      Biomedical Informatics: the past, present and future
      Garmire L. 2024 Jul 12;
    • Presentation
      Applying single cell RNA-Seq data to clinical applications
      Garmire L. 2024 Jul 10;
    • Presentation
      Utilize the Cellular Heterogeneity at the Single Cell Level for Cancer Treatment and Survival Prediction
      Garmire L. 2024 Jul 10;
    • Presentation
      single-cell and spatial transcriptomics-based cancer drug and progression prediction
      Garmire L. 2024 Jun 14;
    • Presentation
      Panel discussion on spatial biology and informatics
      2024 Jun 10;
    • Preprint
      Rescue Blood Contamination in scRNA-Seq Data by Originator, a Computational Deciphering Tool using Genetic and Contextual Information.
      Unjitwattana T, Huang Q, Yang Y, Yang Y, Zhou M, Du Y, Garmire LX. 2024 Jun 4; DOI:10.1101/2024.04.04.588144
      PMID: 38617220
    • Journal Article
      Prediction of spontaneous preterm birth using supervised machine learning on metabolomic data: A case-cohort study.
      Al Ghadban Y, Du Y, Charnock-Jones DS, Garmire LX, Smith GCS, Sovio U. BJOG, 2024 Jun; 131 (7): 908 - 916. DOI:10.1111/1471-0528.17723
      PMID: 37984426
    • Preprint
      Multimodality Integration of Neural Social Activation and Social and Language Scores Reveals Three Replicable Profound and Milder Autism Subtypes With Divergent Clinical Outcomes
      Taluja V, Nazari S, Zahiri J, Garmire L, Pierce K, Xiao Y, Courchesne E. medRxiv, DOI:10.1101/2024.05.30.24308230