Herman KH Fung
Assistant Professor
[email protected]

Available to mentor

Herman KH Fung
Assistant Professor
  • About
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  • Research Overview
  • Recent Publications
  • About

    Dr. Fung received his Ph.D. studying how bacteriophages package their DNA using a combination of X-ray crystallography, single-particle cryo-EM, NMR spectroscopy and TIRF microscopy in the labs of Dr. Fred Antson and Dr. Christoph Baumann at the University of York, UK, supported by a Wellcome Trust fellowship. As a postdoctoral fellow with Dr. Julia Mahamid and Dr. Christoph Mueller at the European Molecular Biology Laboratory, Germany, Dr. Fung studied eukaryotic gene transcription using single-particle cryo-EM and cryo-electron tomography (cryo-ET). Driven by a need for better technology, he co-developed tools for correlative and automated focused ion beam (FIB) milling and labeling strategies for protein localization, funded by an EMBL Interdisciplinary Postdoctoral Fellowship and a DFG Priority Program Independence Accelerator Award. In his independent lab, Dr. Fung continues to explore the mechanistic detail of protein-nucleic acid systems in cells by combining and developing structural cell biology tools. The lab currently focuses on understanding how the 3-D structure of human chromatin impacts gene expression and development.

    Links
    • Fung Lab
    Research Overview

    The 3D structure of chromatin strongly influences a cell's gene program, fate and function. Our lab uses cryo-electron tomography (cryo-ET) to visualize native chromatin inside cells and quantitatively analyze their structural changes during cellular differentiation. Combined with single-particle cryo-electron microscopy (cryo-EM) and biophysical analysis of key chromatin complexes, we seek to uncover the molecular basis of gene activation and repression central to development. Keeping in step with biology, we develop correlative imaging and labelling approaches to enable multi-scale targeted studies of cellular processes by light and electron microscopy.

    Recent Publications See All Publications
    • Journal Article
      Genetically encoded multimeric tags for subcellular protein localization in cryo-EM.
      Fung HKH, Hayashi Y, Salo VT, Babenko A, Zagoriy I, Brunner A, Ellenberg J, Müller CW, Cuylen-Haering S, Mahamid J. Nat Methods, 2023 Dec; 20 (12): 1900 - 1908. DOI:10.1038/s41592-023-02053-0
      PMID: 37932397
    • Journal Article
      Structural basis of DNA packaging by a ring-type ATPase from an archetypal viral system.
      Fung HKH, Grimes S, Huet A, Duda RL, Chechik M, Gault J, Robinson CV, Hendrix RW, Jardine PJ, Conway JF, Baumann CG, Antson AA. Nucleic Acids Res, 2022 Aug 26; 50 (15): 8719 - 8732. DOI:10.1093/nar/gkac647
      PMID: 35947691
    • Journal Article
      Mechanism of RNA polymerase I selection by transcription factor UAF.
      Baudin F, Murciano B, Fung HKH, Fromm SA, Mattei S, Mahamid J, Müller CW. Sci Adv, 2022 Apr 22; 8 (16): eabn5725 DOI:10.1126/sciadv.abn5725
      PMID: 35442737
    • Journal Article
      A modular platform for automated cryo-FIB workflows.
      Klumpe S, Fung HK, Goetz SK, Zagoriy I, Hampoelz B, Zhang X, Erdmann PS, Baumbach J, Müller CW, Beck M, Plitzko JM, Mahamid J. Elife, 2021 Dec 24; 10: DOI:10.7554/eLife.70506
      PMID: 34951584
    • Chapter
      Cryogenic Preparations of Biological Specimens for Cryo-Electron Tomography
      D’Imprima E, Fung HKH, Zagoriy I, Mahamid J. Focus on Structural Biology, 2024 11: Cryo-Electron Tomography, 85 - 114. DOI:10.1007/978-3-031-51171-4_3
    • Journal Article
      Insights into a viral motor: the structure of the HK97 packaging termination assembly.
      Hawkins DEDP, Bayfield OW, Fung HKH, Grba DN, Huet A, Conway JF, Antson AA. Nucleic Acids Res, 2023 Jul 21; 51 (13): 7025 - 7035. DOI:10.1093/nar/gkad480
      PMID: 37293963
    • Journal Article
      Molecular mechanisms of stress-induced reactivation in mumps virus condensates.
      Zhang X, Sridharan S, Zagoriy I, Eugster Oegema C, Ching C, Pflaesterer T, Fung HKH, Becher I, Poser I, Müller CW, Hyman AA, Savitski MM, Mahamid J. Cell, 2023 Apr 27; 186 (9): 1877 - 1894.e27. DOI:10.1016/j.cell.2023.03.015
      PMID: 37116470
    • Preprint
      Insights into a viral motor: the structure of the HK97 packaging termination assembly
      Hawkins DEDP, Bayfield O, Fung HKH, Grba D, Huet A, Conway J, Antson A. 2023 bioRxiv, DOI:10.1101/2023.02.24.529869
    Featured News & Stories
    Department News
    CDB is excited to welcome Herman Fung, Ph.D.
    Herman joins CDB with research interests that include structural cell biology, Cryo-electron tomography, Cro-electron microscopy, and stem cell biology.